ISSN 2410-7751 (Print)
ISSN 2410-776X (Online)
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Biotechnologia Acta Т. 19, No. 4, 2026
P. 19-42, Bibliography 106, Engl.
UDC 579.26:628.3:577.1
doi: https://doi.org/10.15407/biotech19.04.019
Full text: (PDF, in English)
BIOFILMS IN BIOENERGETICS AND ECOBIOTECHNOLOGY: RESEARCH HISTORY AND APPLICATION PERSPECTIVES
D. KOLTYSHEVA (https://orcid.org/0000-0002-8003-8556)
K. SHCHURSKA (https://orcid.org/0000-0003-4440-3365)
National Technical University of Ukraine “Igor Sikorsky Kyiv Polytechnic Institute”
The historical paradigm shift from studying planktonic bacteria to understanding the protective extracellular polymeric substance (EPS) matrix has fundamentally transformed environmental biotechnology. Once considered operational impediments, biofilms are now recognized as highly organized microbial consortia and essential tools for advanced wastewater treatment, bioremediation, and sustainable bioenergy production.
Aim. The study aimed to analyze the evolution of knowledge regarding biofilms - from early observations to their contemporary role in bioelectrochemical systems and nitrification - thereby outlining future perspectives for the application of microbial communities.
Materials and Methods. A comprehensive theoretical synthesis of contemporary literature was conducted, focusing on EPS matrix dynamics, spatial stratification in granular and membrane bioreactors, and direct interspecies electron transfer (DIET). The analysis encompasses structural data on methanogenic archaea, exoelectrogens (e.g., Geobacter), and rhizosphere biofilms within constructed wetland-microbial fuel cells (CW-MFCs).
Results. Biofilm engineering exploited spatial substrate gradients to facilitate syntrophic metabolism, significantly improving nitrogen removal via ANAMMOX processes and maximizing methane yields. The EPS matrix functions both as a chemical buffer against toxic stress and a conductive scaffold. In bioelectrochemical systems, c-type cytochromes and flavins facilitate efficient long-range electron transfer. Furthermore, biofilm-mediated horizontal gene transfer and quorum-sensing manipulation enhance the biodegradation of recalcitrant xenobiotics, heavy metal biomineralization, and plastic depolymerization.
Conclusions. Transitioning to the targeted engineering of biofilm architecture using synthetic ecology principles significantly intensified environmental resource recovery. Managing the EPS matrix transforms conventional biological treatment into robust, self-regulating biotechnological systems capable of continuous, sustainable energy generation under fluctuating environmental conditions.
Keywords: biofilms, biotechnology, microorganisms, bioremediation, bioenergy, quorum sensing, wastewater treatment.
References
- Baxter, K. J., Sas, E., Clark, K. B., Walsh, M., Pradeep, N., Batool, A., Naney, C., Vargas Cruz, M. A., Kennerdale, N., Das, K., Shi, Z., Kelam, A., Verma, V., Simões, M. F., Neefs, D., Ravichandran, V., Tirumalai, M. R., Barcenilla, B. B., Macori, G., ... Brereton, N. J. B. (2026). Biofilms: from the cradle of life to life support. npj Biofilms and Microbiomes, 12(1). https://doi.org/10.1038/s41522-025-00875-8
- Ugwu, C. N., Ezeibe, E. N., Emencheta, S. C., Nwagwu, C. S., Ogbonna, K. O., Ejiofor, C. V., Onugwu, A. L., Berebon, D. P., & Attama, A. A. (2025). Biofilms: structure, resistance mechanism, emerging control strategies, and applications. RSC Pharmaceutics. https://doi.org/10.1039/d5pm00094g
- Bamford, N. C., MacPhee, C. E., & Stanley-Wall, N. R. (2023). Microbial Primer: An introduction to biofilms – what they are, why they form and their impact on built and natural environments. Microbiology, 169(8). https://doi.org/10.1099/mic.0.001338
- Biofilms in Nature. Gianforte School of Computing - Computer Science Department | Montana State University. https://www.cs.montana.edu/webworks/projects/stevesbook/contents/chapters/chapter001/section004/blue/page002.html
- Pal, M. K., & Lavanya, M. (2022). Microbial Influenced Corrosion: Understanding Bioadhesion and Biofilm Formation. Journal of Bio- and Tribo-Corrosion, 8(3). https://doi.org/10.1007/s40735-022-00677-x
- Antony van Leeuwenhoek and his "Little animals"; being some account of the father of protozoology and bacteriology and his multifarious discoveries in these disciplines; : Dobell, Clifford, 1886-1949 : Free Download, Borrow, and Streaming : Internet Archive. Internet Archive. https://archive.org/details/antonyvanleeuwen00dobe/page/10/mode/2up
- Ehrlich, G. D., & Arciola, C. R. (2012). From Koch's Postulates to Biofilm Theory. The Lesson of Bill Costerton. The International Journal of Artificial Organs, 35(10), 695–699. https://doi.org/10.5301/ijao.5000169
- Kryvyi, P. A., Gumeniuk, G. L., & Bratchykova, Y. V. (2022). Serhiy Winogradsky – a great Ukrainian. Infusion & Chemotherapy, (3), 57–64. https://doi.org/10.32902/2663-0338-2022-3-57-64
- Høiby, N. (2017). A short history of microbial biofilms and biofilm infections. APMIS, 125(4), 272–275. https://doi.org/10.1111/apm.12686
- Turovskiy, Y., Kashtanov, D., Paskhover, B., & Chikindas, M. L. (2007). Quorum Sensing: Fact, Fiction, and Everything in Between. У Advances in Applied Microbiology (с. 191–234). Elsevier. https://doi.org/10.1016/s0065-2164(07)62007-3
- Anderson, D. C., Hairston, R. V. (1999). The Winogradsky Column & Biofilms: Models for Teaching Nutrient Cycling & Succession in an Ecosystem. American Biology Teacher, 61(6), 453-459. URL: https://aquila.usm.edu/fac_pubs/8684
- Mastroleo, F., Arnau, C., Verbeelen, T., Mysara, M., Gòdia, F., Leys, N., & Van Houdt, R. (2022). Metaproteomics, Heterotrophic Growth, and Distribution of Nitrosomonas europaea and Nitrobacter winogradskyi after Long-Term Operation of an Autotrophic Nitrifying Biofilm Reactor. Applied Microbiology, 2(1), 272–287. https://doi.org/10.3390/applmicrobiol2010020
- Arden, E., & Lockett, W. T. (1914). Experiments on the oxidation of sewage without the aid of filters. Journal of the Society of Chemical Industry, 33(10), 523–539. URL: https://ia600607.us.archive.org/view_archive.php?archive=/8/items/crossref-pre-1923-scholarly-works/10.1002%252Fjctb.5000330309.zip&file=10.1002%252Fjctb.5000331005.pdf
- History of the Water Supply of the World, by Thomas J. Bell—A Project Gutenberg eBook. (1882). Free eBooks | Project Gutenberg. https://www.gutenberg.org/files/66130/66130-h/66130-h.htm#CHAPTER_III
- Rivers Pollution Commission. (1874). Fifth report of the commissioners appointed in 1868 to inquire into the best means of preventing the pollution of rivers. Vol. I. Report and maps. Eyre and Spottiswoode for H.M. Stationery Office. URL: https://www.niph.go.jp/toshokan/koten/Britain/PDF/100718600002.pdf
- Rittmann, B. E., & McCarty, P. L. (1980). Model of steady-state-biofilm kinetics. Biotechnology and Bioengineering, 22(11), 2343–2357. https://doi.org/10.1002/bit.260221110
- Logan, B. E., Hamelers, B., Rozendal, R., Schröder, U., Keller, J., Freguia, S., Aelterman, P., Verstraete, W., & Rabaey, K. (2006). Microbial Fuel Cells: Methodology and Technology†. Environmental Science & Technology, 40(17), 5181–5192. https://doi.org/10.1021/es0605016
- Rusyn, I., & Gómora-Hernández, J. C. (2024). Constructed wetland microbial fuel cell as enhancing pollutants treatment technology to produce green energy. Biotechnology Advances, 77, 108468. https://doi.org/10.1016/j.biotechadv.2024.108468
- Yang, H., Qi, S., & Yan, Y. (2021). Influencing Factors of biofilm nitrification in long-distance water pipeline. IOP Conference Series: Earth and Environmental Science, 702(1), 012057. https://doi.org/10.1088/1755-1315/702/1/012057
- Gieseke, A., Tarre, S., Green, M., & de Beer, D. (2006). Nitrification in a Biofilm at Low pH Values: Role of In Situ Microenvironments and Acid Tolerance. Applied and Environmental Microbiology, 72(6), 4283–4292. https://doi.org/10.1128/aem.00241-06
- Tabraiz, S., Aiswarya, N. M., Taneja, H., Narayanan, R. A., & Ahmed, A. (2022). Biofilm-based simultaneous nitrification, denitrification, and phosphorous uptake in wastewater by Neurospora discreta. Journal of Environmental Management, 324, 116363. https://doi.org/10.1016/j.jenvman.2022.116363
- Sedlacek, C. J. (2020). It Takes a Village: Discovering and Isolating the Nitrifiers. Frontiers in Microbiology, 11. https://doi.org/10.3389/fmicb.2020.01900
- Tan, Q., Zhang, G., Ding, A., Bian, Z., Wang, X., Xing, Y., & Zheng, L. (2023). Anthropogenic land-use activities within watersheds reduce comammox activity and diversity in rivers. Journal of Environmental Management, 338, 117841. https://doi.org/10.1016/j.jenvman.2023.117841
- Zulkarnaini, Z., Matsuura, N., Kanazawa, S., Honda, R., & Yamamoto-Ikemoto, R. (2024). Optimizing start-up strategies for the two-inflow nitritation/anammox process: influence on biofilm microbial community composition. Water Science & Technology. https://doi.org/10.2166/wst.2024.065
- Woznica, A., Nowak, A., Beimfohr, C., Karczewski, J., & Bernas, T. (2010). Monitoring structure and activity of nitrifying bacterial biofilm in an automatic biodetector of water toxicity. Chemosphere, 78(9), 1121–1128. https://doi.org/10.1016/j.chemosphere.2009.12.035
- Sharif Shourjeh, M., Kowal, P., Lu, X., Xie, L., & Drewnowski, J. (2021). Development of Strategies for AOB and NOB Competition Supported by Mathematical Modeling in Terms of Successful Deammonification Implementation for Energy-Efficient WWTPs. Processes, 9(3), 562. https://doi.org/10.3390/pr9030562
- Pellicer‐Nàcher, C., Franck, S., Gülay, A., Ruscalleda, M., Terada, A., Al‐Soud, W. A., Hansen, M. A., Sørensen, S. J., & Smets, B. F. (2013). Sequentially aerated membrane biofilm reactors for autotrophic nitrogen removal: microbial community composition and dynamics. Microbial Biotechnology, 7(1), 32–43. https://doi.org/10.1111/1751-7915.12079
- Laureni, M., Weissbrodt, D. G., Villez, K., Robin, O., de Jonge, N., Rosenthal, A., Wells, G., Nielsen, J. L., Morgenroth, E., & Joss, A. (2019). Biomass segregation between biofilm and flocs improves the control of nitrite-oxidizing bacteria in mainstream partial nitritation and anammox processes. Water Research, 154, 104–116. https://doi.org/10.1016/j.watres.2018.12.051
- Tsuneda, S., Park, S., Hayashi, H., Jung, J., & Hirata, A. (2001). Enhancement of nitrifying biofilm formation using selected EPS produced by heterotrophic bacteria. Water Science and Technology, 43(6), 197–204. https://doi.org/10.2166/wst.2001.0374
- Sepehri, A., & Sarrafzadeh, M.-H. (2019). Activity enhancement of ammonia-oxidizing bacteria and nitrite-oxidizing bacteria in activated sludge process: metabolite reduction and CO2 mitigation intensification process. Applied Water Science, 9(5). https://doi.org/10.1007/s13201-019-1017-6
- Lu, Y., Natarajan, G., Nguyen, T. Q. N., Thi, S. S., Arumugam, K., Seviour, T., Williams, R. B. H., Wuertz, S., & Law, Y. (2022). Controlling anammox speciation and biofilm attachment strategy using N-biotransformation intermediates and organic carbon levels. Scientific Reports, 12(1). https://doi.org/10.1038/s41598-022-26069-2
- Wang, L., Chen, Y., Yang, J., Li, J., Zhang, Y., & Wang, X. (2025). Dynamic Restoration of Collapsed Anammox Biofilm Systems: Integrating Process Optimization, Microbial Community Succession, and Machine Learning-Based Prediction. Processes, 13(6), 1672. https://doi.org/10.3390/pr13061672
- Suto, R., Ishimoto, C., Chikyu, M., Aihara, Y., Matsumoto, T., Uenishi, H., Yasuda, T., Fukumoto, Y., & Waki, M. (2017). Anammox biofilm in activated sludge swine wastewater treatment plants. Chemosphere, 167, 300–307. https://doi.org/10.1016/j.chemosphere.2016.09.121
- Yan, Z., Han, X., Lin, Y., Jin, Y., & Song, X. (2025). Insights into partial nitrification in a membrane-aerated biofilm reactor (MABR): Performance, microbial characteristics, and mechanisms. ACS ES&T Engineering, 5(1), 123–136. https://pubs.acs.org/doi/10.1021/acsestengg.5c00248
- Zhong, H., Tang, Y., Wang, M., & Dong, L. (2024). Achieving Simultaneous Nitrification and Denitrification by a Membrane Aerated Biofilm Reactor at Moderate Lumen Pressure. Separations, 11(8), 227. https://doi.org/10.3390/separations11080227
- Zhang, Y., Han, X., Jiang, Y., Dong, Y., Shi, L., Yin, H., & Hu, Y. (2026). Genetically Boosting Electron Transfer in Electroactive Biofilms for Improved Sensitivity of Microbial Fuel Cell‐Based Biosensing. Microbial Biotechnology, 19(4). https://doi.org/10.1111/1751-7915.70356
- Sablii, L., Zhukova, V., Hrynevych, A., & Drewnowski, J. (2025). Biofilm properties on carriers for wastewater treatment: supporting Green Deal. Desalination and Water Treatment, 101608. https://doi.org/10.1016/j.dwt.2025.101608
- Santoro, C., Arbizzani, C., Erable, B., & Ieropoulos, I. (2017). Microbial fuel cells: From fundamentals to applications. A review. Journal of Power Sources, 356, 225–244. https://doi.org/10.1016/j.jpowsour.2017.03.109
- El-Raheem, H. A. (2022). Biofilm and the electron transfer mechanism in bioelectrochemical systems. Zewail City of Science and Technology. https://www.researchgate.net/publication/365560371_Biofilm_and_the_Electron_Transfer_Mechanism_in_Bioelectrochemical_Systems
- Santoro, C., Arbizzani, C., Erable, B., & Ieropoulos, I. (2017). Microbial fuel cells: From fundamentals to applications. A review. Journal of Power Sources, 356, 225–244. https://doi.org/10.1016/j.jpowsour.2017.03.109
- Bullen, R. A., Arnot, T. C., Lakeman, J. B., & Walsh, F. C. (2006). Biofuel cells and their development. Biosensors and Bioelectronics, 21(11), 2015–2045. https://doi.org/10.1016/j.bios.2006.01.030
- Flores-Estrella, R., de Jesús Garza-Rubalcava, U., Haarstrick, A., & Alcaraz-González, V. (2019). A Dynamic Biofilm Model for a Microbial Electrolysis Cell. Processes, 7(4), 183. https://doi.org/10.3390/pr7040183
- Shchurska, K., Zubchenko, L., Sobczuk, H., & Kuzminskyy, Y. (2019). High Exoelectrogenic Biofilms Formation in Microbial Fuel Cells. Innovative Biosystems and Bioengineering, 3(4), 246–252. https://doi.org/10.20535/ibb.2019.3.4.185159
- Flemming, H.-C. (2016). EPS—Then and Now. Microorganisms, 4(4), 41. https://doi.org/10.3390/microorganisms4040041
- Xing, F., Xi, H., Yu, Y., & Zhou, Y. (2021). Anode biofilm influence on the toxic response of microbial fuel cells under different operating conditions. Science of The Total Environment, 775, 145048. https://doi.org/10.1016/j.scitotenv.2021.145048
- Mahmoud, R. H., Samhan, F. A., Ali, G. H., Ibrahim, M. K., & Hassan, R. Y. A. (2018). Assisting the biofilm formation of exoelectrogens using nanostructured microbial fuel cells. Journal of Electroanalytical Chemistry, 824, 128–135. https://doi.org/10.1016/j.jelechem.2018.07.045
- Yan, X., Du, Q., Mu, Q., Tian, L., Wan, Y., Liao, C., Zhou, L., Yan, Y., Li, N., Logan, B. E., & Wang, X. (2021). Long-Term Succession Shows Interspecies Competition of Geobacter in Exoelectrogenic Biofilms. Environmental Science & Technology, 55(21), 14928–14937. https://doi.org/10.1021/acs.est.1c03010
- Jasso-Chávez, R., Santiago-Martínez, M. G., Lira-Silva, E., Pineda, E., Zepeda-Rodríguez, A., Belmont-Díaz, J., Encalada, R., Saavedra, E., & Moreno-Sánchez, R. (2015). Air-Adapted Methanosarcina acetivorans Shows High Methane Production and Develops Resistance against Oxygen Stress. PLOS ONE, 10(2), Стаття e0117331. https://doi.org/10.1371/journal.pone.0117331
- Smallwood, C. R., Hasson, N., Yang, J., Schambach, J., Bennett, H., Ricken, B., Sammon, J., Mascarenas, M., Eberling, N., Kolker, S., Whiting, J., Mays, W. D., Anthony, K. W., & Miller, P. R. (2025). Bioindicator “fingerprints” of methane-emitting thermokarst features in Alaskan soils. Frontiers in Microbiology, 15. https://doi.org/10.3389/fmicb.2024.1462941
- Zhang, L., Yin, Y., Sun, Y., Liang, X., Graham, D. E., Pierce, E. M., Löffler, F. E., & Gu, B. (2023). Inhibition of Methylmercury and Methane Formation by Nitrous Oxide in Arctic Tundra Soil Microcosms. Environmental Science & Technology. https://doi.org/10.1021/acs.est.2c09457
- Bhat, S. P., & Roach, D. J. (2025). Bioactivity of microbial biofilms in extreme environments. Frontiers in Microbiology, 16. https://doi.org/10.3389/fmicb.2025.1602583
- Gambelli, L., Isupov, M. N., Conners, R., McLaren, M., Bellack, A., Gold, V., Rachel, R., & Daum, B. (2022). An archaellum filament composed of two alternating subunits. Nature Communications, 13(1). https://doi.org/10.1038/s41467-022-28337-1
- Beeby, M., & Daum, B. (2025). How Does the Archaellum Work? Biomolecules, 15(4), 465. https://doi.org/10.3390/biom15040465
- Orell, A., Fröls, S., & Albers, S.-V. (2013). Archaeal Biofilms: The Great Unexplored. Annual Review of Microbiology, 67(1), 337–354. https://doi.org/10.1146/annurev-micro-092412-155616
- Calderón, K., González-Martínez, A., Gómez-Silván, C., Osorio, F., Rodelas, B., & González-López, J. (2013). Archaeal Diversity in Biofilm Technologies Applied to Treat Urban and Industrial Wastewater: Recent Advances and Future Prospects. International Journal of Molecular Sciences, 14(9), 18572–18598. https://doi.org/10.3390/ijms140918572
- Bang, C., Ehlers, C., Orell, A., Prasse, D., Spinner, M., Gorb, S. N., Albers, S.-V., & Schmitz, R. A. (2014). Biofilm formation of mucosa-associated methanoarchaeal strains. Frontiers in Microbiology, 5. https://doi.org/10.3389/fmicb.2014.00353
- Wolferen, M., Orell, A., & Albers, S.-V. (2018). Archaeal biofilm formation. Nature Reviews Microbiology, 16(11), 699–713. https://doi.org/10.1038/s41579-018-0058-4
- Ng, J. C. Y., & Chiu, J. M. Y. (2020). Changes in biofilm bacterial communities in response to combined effects of hypoxia, ocean acidification and nutrients from aquaculture activity in Three Fathoms Cove. Marine Pollution Bulletin, 156, 111256. https://doi.org/10.1016/j.marpolbul.2020.111256
- Lovley, D. R. (2011). Live wires: direct extracellular electron exchange for bioenergy and the bioremediation of energy-related contamination. Energy & Environmental Science, 4(12), 4896. https://doi.org/10.1039/c1ee02229f
- Yan, Y., Zhang, J., Tian, L., Yan, X., Du, L., Leininger, A., Zhang, M., Li, N., Ren, Z. J., & Wang, X. (2023). DIET-like Mutualism of Geobacter and Methanogens at Specific Electrode Potential Boosts Production of both Methane and Hydrogen from Propionate. Water Research, 119911. https://doi.org/10.1016/j.watres.2023.119911
- Tsygankov, S., Ivanova, T., Spivak, C., Lukashevich, K., & Blume, Y. (2024). Development of a Complex Technology for Replacing Fossil Energy Carriers with By-Products in the Bioethanol Production. Science and Innovation, 20(5), 53–61. https://doi.org/10.15407/scine20.05.053
- Vovk, Y. A., Tsygankov S.P. (2026). USE OF PEA FRACTIONATION WASTES IN BIOETHANOL PRODUCTION. Biotechnologia Acta, 19(1), 48–54. https://doi.org/10.15407/biotech19.01.048
- He, S., Zhan, Z., Shi, C., Wang, S., & Shi, X. (2022). Ethanol at Subinhibitory Concentrations Enhances Biofilm Formation in Salmonella Enteritidis. Foods, 11(15), 2237. https://doi.org/10.3390/foods11152237
- Tozluoğlu, A., Özyurek, Ö., Çöpür, Y., & Özdemir, H. (2015). Integrated Production of Biofilm, Bioethanol, and Papermaking Pulp from Wheat Straw. BioResources, 10(4). https://doi.org/10.15376/biores.10.4.7834-7853
- Rich, J. O., Leathers, T. D., Bischoff, K. M., Anderson, A. M., & Nunnally, M. S. (2015). Biofilm formation and ethanol inhibition by bacterial contaminants of biofuel fermentation. Bioresource Technology, 196, 347–354. https://doi.org/10.1016/j.biortech.2015.07.071
- Marynchenko, L., Nizhelska, O., Shirinyan, A., & Gorchakova, N. (2024). Evaluating the Interaction Between Silicon Surface and Microorganisms in Various Solvents Under the Influence of a Static Magnetic Field Using Fractal Analysis. Innovative Biosystems and Bioengineering, 8(2), 69–84. https://doi.org/10.20535/ibb.2024.8.2.297364
- Apollon, W., Rusyn, I., Gwenzi, W., Mittal, Y., Chaukura, N., Sato, C., & Kamaraj, S.-K. (2026). Recent advances in abiotic and biotic cathodes for microbial energy generation systems. Renewable and Sustainable Energy Reviews, 232, 116758. https://doi.org/10.1016/j.rser.2026.116758
- Rusyn, I., Mittal, Y., & Apollon, W. (2025). Plant microbial fuel cells: An innovative path toward integrated food and energy production for a sustainable future. Journal of Power Sources. https://doi.org/10.1016/j.jpowsour.2025.237344
- Greenman, J., Thorn, R., Willey, N., & Ieropoulos, I. (2024). Energy harvesting from plants using hybrid microbial fuel cells; potential applications and future exploitation. Frontiers in Bioengineering and Biotechnology, 12. https://doi.org/10.3389/fbioe.2024.1276176
- Freire, J. B., Faustino, L., Abreu, A. A., Cruz, I. A. G. D. e., & Costa, E. J. X. (2026). Microbial Communities Powering Plant‐Microbial Fuel Cells: Diversity, Functions and Biotechnological Perspectives. Microbial Biotechnology, 19(2). https://doi.org/10.1111/1751-7915.70310
- Golub, N., Zubchenko, L., Demianenko, I., Zhang, Y., & Seminska, N. (2024). Intensification of the Biohydrogen Production Process. Innovative Biosystems and Bioengineering, 8(1), 37–45. https://doi.org/10.20535/ibb.2024.8.1.285588
- Le Borgne & Baquerizo. (2019). Microbial Ecology of Biofiltration Units Used for the Desulfurization of Biogas. ChemEngineering, 3(3), 72. https://doi.org/10.3390/chemengineering3030072
- Okoro, O. V., & Sun, Z. (2019). Desulphurisation of Biogas: A Systematic Qualitative and Economic-Based Quantitative Review of Alternative Strategies. ChemEngineering, 3(3), 76. https://doi.org/10.3390/chemengineering3030076
- Koltysheva, D., Shchurska, K., & Kuzminskyi, Y. (2021). Microalgae and cyanobacteria as biological agents of biocathodes in biofuel cells. BioTechnologia, 102(4), 437–444. https://doi.org/10.5114/bta.2021.111108
- Koltysheva, D., Shchurska, K., & Kuzminskyi, Y. (2024). Electrical Energy Generation by Microbial Fuel Cells With Microalgae on the Cathode. Innovative Biosystems and Bioengineering, 8(1), 46–55. https://doi.org/10.20535/ibb.2024.8.1.290311
- Koltysheva, D. Shchurska, K., Kuzminskyi, Y. (2020). Promising areas of biofuel cell use. Biotechnologia Acta, 13(4), 5–13. https://doi.org/10.15407/biotech13.04.005
- Maity, S., Sarkar, D., Poddar, K., Patil, P., & Sarkar, A. (2022). Biofilm-Mediated Heavy Metal Removal from Aqueous System by Multi-Metal-Resistant Bacterial Strain Bacillus sp. GH-s29. Applied Biochemistry and Biotechnology. https://doi.org/10.1007/s12010-022-04288-7
- Yousuf, S., & Singh, R. (2024). Biofilm-Mediated Heavy Metals Bioremediation. У Microbial Applications for Environmental Sustainability (с. 201–215). Springer Nature Singapore. https://doi.org/10.1007/978-981-97-0676-1_12
- Mallick, S., Pradhan, T., & Das, S. (2025). Bacterial biomineralization of heavy metals and its influencing factors for metal bioremediation. Journal of Environmental Management, 373, 123977. https://doi.org/10.1016/j.jenvman.2024.123977
- Maity, S., Sarkar, D., Poddar, K., Patil, P., & Sarkar, A. (2022). Biofilm-Mediated Heavy Metal Removal from Aqueous System by Multi-Metal-Resistant Bacterial Strain Bacillus sp. GH-s29. Applied Biochemistry and Biotechnology. https://doi.org/10.1007/s12010-022-04288-7
- Chu, W.-c., Gao, Y.-y., Wu, Y.-x., & Liu, F.-f. (2024). Biofilm of petroleum-based and bio-based microplastics in seawater in response to Zn(II): Biofilm formation, community structure, and microbial function. Science of The Total Environment, 172397. https://doi.org/10.1016/j.scitotenv.2024.172397
- Lahiri, D., Nag, M., Dey, A., Sarkar, T., Joshi, S., Pandit, S., Das, A. P., Pati, S., Pattanaik, S., Tilak, V. K., & Ray, R. R. (2021). Biofilm Mediated Degradation of Petroleum Products. Geomicrobiology Journal, 1–10. https://doi.org/10.1080/01490451.2021.1968979
- Sanjana, M., R, P., Katti, U. S., & Kavitha, R. V. (2024). Bioremediation - The recent drift towards sustainable environment. Environmental Science: Advances. https://doi.org/10.1039/d3va00358b
- Keshav, P. S., Shivesh, S., N, Kumar, S., Vasudha, S., Kirti, T., & Sphoorti, S. (2013). Nature and role of root exudates: Efficacy in bioremediation. African Journal of Biotechnology, 10(48), 9717–9724. https://doi.org/10.5897/ajb10.2552
- Sun, L., Mo, J., Wang, Z., Lin, S., Wang, D., Li, Z., Wang, Y., Wu, J., Guo, W., Chen, J., Wu, Z., & Chen, L. (2025). Molecular Mechanisms of Root Exudate-Mediated Remediation in Soils Co-Contaminated with Heavy Metals and Polycyclic Aromatic Hydrocarbons. Toxics, 13(12), 1044. https://doi.org/10.3390/toxics13121044
- Liu, Y., Dai, Z., Wang, D., Ma, Y., & Guo, P. (2025). Root surface microbial biofilms in phytoremediation: Formation processes, regulatory mechanisms, influencing factors and roles. Environmental Technology & Innovation, 40, 104406. https://doi.org/10.1016/j.eti.2025.104406
- Kalam, S., Basu, A., & Ankati, S. (2017). Plant Root-Associated Biofilms in Bioremediation. У Biofilms in Plant and Soil Health (с. 337–355). John Wiley & Sons, Ltd. https://doi.org/10.1002/9781119246329.ch18
- Pandey, P., & Arora, N. K. (2020). Prof. Ananda Mohan Chakrabarty: The Superbug Superhero! Environmental Sustainability, 3(3), 333–335. https://doi.org/10.1007/s42398-020-00117-x
- Costerton, J. W. (1999). Bacterial Biofilms: A Common Cause of Persistent Infections. Science, 284(5418), 1318–1322. https://doi.org/10.1126/science.284.5418.1318
- Ikechukwuka Ejafu, M., & Paulina Akinro, O. (2025). The Capacity of Bacteria Biofilms for Bioremediation. In Exploring Bacterial Biofilms. IntechOpen. https://doi.org/10.5772/intechopen.1009618
- Abe, K., Nomura, N., & Suzuki, S. (2020). Biofilms: hot spots of horizontal gene transfer (HGT) in aquatic environments, with a focus on a new HGT mechanism. FEMS Microbiology Ecology, 96(5). https://doi.org/10.1093/femsec/fiaa031
- Williams, T. B., Russell, A. R., & Mitchell, J. C. (2022). Effects of Dual‐Species Biofilm Formation on Plastic Degradation by Ideonella sakaiensis. The FASEB Journal, 36(S1). https://doi.org/10.1096/fasebj.2022.36.s1.r5086
- Benes, K., Liguori, M., Velikaneye, C. J., Kispert, S., Pishnyuk, A., Luzik, E., Sun, H., Xiao, D., & Gu, H. (2025). Harnessing Biofilm-Mediated Plastic Biodegradation: Innovating Smart Material Design. ACS Applied Engineering Materials. https://doi.org/10.1021/acsaenm.5c00179
- Sandeep, R., Muscolino, J. F., Macêdo, W. V., Piculell, M., Christensson, M., Poulsen, J. S., Nielsen, J. L., & Vergeynst, L. (2023). Effect of Biofilm Thickness on the Activity and Community Composition of Phosphorus Accumulating Bacteria in a Moving Bed Biofilm Reactor. Water Research, 120599. https://doi.org/10.1016/j.watres.2023.120599
- Pereira, J., Pang, S., Borsje, C., Sleutels, T., Hamelers, B., & ter Heijne, A. (2022). Real-time monitoring of biofilm thickness allows for determination of acetate limitations in bio-anodes. Bioresource Technology Reports, 18, 101028. https://doi.org/10.1016/j.biteb.2022.101028
- Zhuang, X., Tang, S., Dong, W., Xin, F., Jia, H., & Wu, X. (2023). Improved performance of Cr(vi)-reducing microbial fuel cells by nano-FeS hybridized biocathodes. RSC Advances, 13(10), 6768–6778. https://doi.org/10.1039/d3ra00683b
- Wei, Q., Pang, F., Zhao, D., Chu, W., Pan, Z., & Ma, X. (2026). Indole-3-Acetic Acid-Assisted Microalgal Biofilm for High-Efficiency Wastewater Purification: Biomass Densification and Pollutant Removal Kinetics. Water, 18(7), 805. https://doi.org/10.3390/w18070805
- Tsagkari, E., Connelly, S., Liu, Z., McBride, A., & Sloan, W. T. (2022). The role of shear dynamics in biofilm formation. npj Biofilms and Microbiomes, 8(1). https://doi.org/10.1038/s41522-022-00300-4
- Wang, S., Zhu, H., Zheng, G., Dong, F., & Liu, C. (2022). Dynamic Changes in Biofilm Structures under Dynamic Flow Conditions. Applied and Environmental Microbiology. https://doi.org/10.1128/aem.01072-22
- Huang, H., Zeng, S., Luo, C., & Long, T. (2023). Separate effect of turbulent pulsation on internal mass transfer in porous biofilms. Environmental Research, 217, 114972. https://doi.org/10.1016/j.envres.2022.114972
- Yang, X., Zhou, Y., Zhang, L., Benally, C., & Liu, Y. (2025). Enhanced biofilm formation and municipal wastewater treatment efficiency using granular activated carbon modified bio-ball carriers in moving bed biofilm reactor. Bioresource Technology, 132947. https://doi.org/10.1016/j.biortech.2025.132947
- van den Berg, L., Toja Ortega, S., van Loosdrecht, M. C. M., & de Kreuk, M. K. (2022). Diffusion of soluble organic substrates in aerobic granular sludge: Effect of molecular weight. Water Research X, 16, 100148. https://doi.org/10.1016/j.wroa.2022.100148
- Markowska, K., Szymanek-Majchrzak, K., Pituch, H., & Majewska, A. (2024). Understanding Quorum-Sensing and Biofilm Forming in Anaerobic Bacterial Communities. International Journal of Molecular Sciences, 25(23), 12808. https://doi.org/10.3390/ijms252312808
- Masatlis, I., Chatzis, A., & Zouboulis, A. (2025). Biofilm Control in Wastewater Treatment: A Review Regarding the Application of Quorum Sensing and Quenching Processes and Future Perspectives. Water, 18(1), 77. https://doi.org/10.3390/w18010077
- Abera, G. B., Trømborg, E., Solli, L., Walter, J. M., Wahid, R., Govasmark, E., Horn, S. J., Aryal, N., & Feng, L. (2024). Biofilm application for anaerobic digestion: a systematic review and an industrial scale case. Biotechnology for Biofuels and Bioproducts, 17(1). https://doi.org/10.1186/s13068-024-02592-4
- Sankaran, R., Markandan, K., Paul Peter, A., Tiong, Y. W., Ramanathan, S., & Keith, M. J. (2026). A review on bioelectrochemical systems: From mechanisms to applications in bioenergy, wastewater treatment, and biochemical production. Fuel Processing Technology, 290, 108513. https://doi.org/10.1016/j.fuproc.2026.108513
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